POPULATION SCALE: CAL haplotypes
Haplotype	Frequency	Strain
1	100	LMK-211
		F5-163-L3
		F5-134-2-S4
		F5-129-L2
		F5-240-L4
		F5-210-L4
		F5-228-2-L4
		F5-205-S3
		F5-164-L2
		F5-219-S1
		F5-206-S2
		F5-211-S1
		F5-148-L1
		F5-178-L1
		F5-137-L3
		F5-169-S2
		F5-134-1-L2
		F5-206-S3
		F5-219-L2
		F5-238-S1
		F5-213-L1
		F5-245-S1
		F5-142-L1
		F5-147-S2
		F5-169-S1
		F5-199-L1
		F5-141-L2
		F5-156-S1
		F5-177-L3
		F5-207-L2
		F5-216-L3
		F5-240-1-S3
		F1-31-L2
		F1-123-L2
		F1-100-L2
		SC-1
		BLA
		CS
		MUL
		PIP-2
		PIP-4
		CLV-1
		CLV-2
		PHL-1
		PHL-2
		JAK-1
		JAK-5
		LGN-4
		LES-1
		LES-2
		LES-3
		REX-1
		REX-4
		MRV-1
		MRV-2
		MRV-4
		TMO-5
		MLN-1
		MLN-3
		GNV-1
		T-4
		Nor-1-1
		Nor-1-2
		Nor-2-1
		Nor-2-3
		Nor-3-2
		Nor-3-3
		Nor-4-1
		Nor-4-2
		Nor-4-3
		Nor-6-1
		Nor-6-2
		Nor-6-3
		A-1
		B-1
		B-2
		B-3
		B-4
		B-5
		B-6
		B-7
		B-8
		B-9
		B-10
		C-1
		C-3
		C-4
		C-6
		C-7
		C-9
		D-1
		D-2
		D-3
		D-4
		D-5
		D-6
		D-7
		D-8
		D-9
		D-10
2	27	IC-169
		IC-170
		IC-171
		IC-172
		IC-178
		IC-179
		IC-180
		IC-192
		IC-193
		IC-194
		IC-212
		IC-213
		IC-215
		IC-251
		IC-255
		IC-258
		IC-259
		IC-260
		IC-264
		IC-327
		IC-328
		IC-329
		IC-341
		IC-347
		IC-348
		S1-A5-2
		S3-A5-2
3	212	W1-A1-1
		Ss-82
		Ss-87
		Ss-36
		Ss-30
		Ss-68
		Ss-1
		Ss-21
		Ss-49
		Ss-19
		Ss-51
		Ss-45
		Ss-71
		Ss-43
		689
		728
		796
		799
		802
		805
		808
		811
		814
		817
		820
		823
		827
		829
		833
		835
		838
		839
		845
		846
		847
		848
		849
		Lou-4-2
		Lou-4-3
		Lou-3-3
		Lou-3-2
		Lou-2-3
		Lou-2-2
		C-10
		C-8
		C-5
		C-2
		W3-A3-5
		W3-A3-2
		W3-A1-5
		W3-A1-3
		W2-A4-5
		W2-A4-4
		W2-A3-5
		W2-A3-4
		W1-A5-4
		W1-A5-1
		W1-A3-3
		W1-A3-1
		S6-A2-5
		S6-A2-2
		S6-A4-2
		S6-A4-1
		S3-A4-2
		S3-A4-1
		S1-A3-2
		S1-A3-1
		Nor-2-2
		Nor-1-3
		TK
		T-18
		T-17
		T-16
		T-12
		T-11
		T-10
		T-7
		T-6
		T-3
		T-2
		GNV-4
		GNV-3
		MLN-5
		TMO-3
		TMO-1
		REX-2
		LGN-3
		LGN-1
		JAK-4
		CLV-5
		TMC-4
		TMC-2
		TMC-1
		PIP-1
		IC-288
		IC-286
		IC-284
		IC-278
		IC-277
		IC-276
		IC-273
		IC-271
		IC-239
		IC-238
		IC-236
		IC-190
		IC-189
		IC-186
		IC-175
		IC-174
		Lou-6-1
		Lou-5-5
		Lou-5-4
		Lou-5-3
		Lou-5-2
		Lou-5-1
		Lou-4-5
		Lou-4-4
		Lou-4-1
		Lou-3-5
		Lou-3-4
		Lou-3-1
		Lou-2-5
		Lou-2-4
		Lou-2-1
		Lou-1-1
		865
		861
		860
		858
		857
		856
		855
		Ss-62
		Ss-80
		Ss-88
		Ss-54
		Ss-47
		Ss-79
		Ss-12
		Ss-4
		Ss-34
		Ss-13
		Ss-61
		Ss-72
		Ss-2
		Ss-83
		724
		729
		797
		800
		803
		806
		809
		812
		815
		818
		822
		825
		828
		831
		834
		837
		842
		854
		853
		852
		851
		850
		843
		841
		840
		836
		832
		830
		826
		824
		819
		816
		813
		810
		807
		804
		801
		798
		795
		727
		680
		Ss-70
		Ss-9
		Ss-84
		Ss-18
		Ss-38
		Ss-57
		Ss-41
		Ss-89
		Ss-10
		Ss-77
		Ss-64
		Ss-81
		Ss-6
		Nor-3-1
		F2-59-L2
		F5-240-4-L1
		F5-223-L2
		F5-213-S1
		F5-134-1-L1
		F5-223-S2
		F5-154-S2
		F5-145-L3
		F5-141-L3
		F5-146-S1
4	1	821
5	1	844