| SPECIES SCALE: EF1 haplotypes | ||
| Haplotype | Frequency | Strain |
| 1 | 84 | LMK-211, |
| F5-163-L3, | ||
| F5-134-2-S4, | ||
| F5-129-L2, | ||
| F5-240-L4, | ||
| F5-210-L4, | ||
| F5-228-2-L4, | ||
| F5-178-L1, | ||
| F5-137-L3, | ||
| F5-169-S2, | ||
| F5-134-1-L2, | ||
| F5-206-S3, | ||
| F5-219-L2, | ||
| F5-238-S1, | ||
| F5-147-S2, | ||
| F5-169-S1, | ||
| F5-199-L1, | ||
| F5-141-L2, | ||
| F5-177-L3, | ||
| F5-216-L3, | ||
| F5-240-1-S3, | ||
| F1-31-L2, | ||
| F1-123-L2, | ||
| Ss-64, | ||
| Ss-30, | ||
| Ss-21, | ||
| Ss-4, | ||
| Ss-57, | ||
| Ss-49, | ||
| Ss-34, | ||
| Ss-38, | ||
| Ss-19, | ||
| Ss-9, | ||
| Ss-70, | ||
| Ss-83, | ||
| 689, | ||
| 728, | ||
| 795, | ||
| 796, | ||
| 825, | ||
| 828, | ||
| 838, | ||
| 840, | ||
| 842, | ||
| 846, | ||
| 850, | ||
| 851, | ||
| 852, | ||
| Lou-1-1, | ||
| Lou-2-5, | ||
| Lou-3-1, | ||
| Lou-3-4, | ||
| Lou-3-5, | ||
| Lou-5-4, | ||
| Lou-6-1, | ||
| PIP-1, | ||
| PIP-4, | ||
| TMC-2, | ||
| CLV-5, | ||
| PHL-1, | ||
| JAK-1, | ||
| LGN-1, | ||
| LGN-4, | ||
| REX-1, | ||
| REX-2, | ||
| TMO-1, | ||
| TMO-3, | ||
| MLN-5, | ||
| T-3, | ||
| T-4, | ||
| T-10, | ||
| TK, | ||
| B-5, | ||
| B-6, | ||
| B-7, | ||
| C-3, | ||
| C-4, | ||
| C-6, | ||
| C-8, | ||
| C-9, | ||
| D-3, | ||
| D-6, | ||
| Lou-3-2, | ||
| Lou-3-3. | ||
| 2 | 138 | F5-205-S3, |
| F5-164-L2, | ||
| F5-219-S1, | ||
| F5-206-S2, | ||
| F5-211-S1, | ||
| F5-148-L1, | ||
| F5-213-L1, | ||
| F5-245-S1, | ||
| F5-142-L1, | ||
| F5-146-S1, | ||
| F5-141-L3, | ||
| F5-145-L3, | ||
| F5-154-S2, | ||
| F5-156-S1, | ||
| F5-207-L2, | ||
| F5-223-L2, | ||
| F5-240-4-L1, | ||
| F1-100-L2, | ||
| F2-59-L2, | ||
| Nor-3-1, | ||
| Ss-62, | ||
| Ss-6, | ||
| Ss-82, | ||
| Ss-80, | ||
| Ss-81, | ||
| Ss-87, | ||
| Ss-88, | ||
| Ss-36, | ||
| Ss-47, | ||
| Ss-10, | ||
| Ss-68, | ||
| Ss-79, | ||
| Ss-89, | ||
| Ss-1, | ||
| Ss-12, | ||
| Ss-41, | ||
| Ss-13, | ||
| Ss-18, | ||
| Ss-51, | ||
| Ss-61, | ||
| Ss-84, | ||
| Ss-45, | ||
| Ss-72, | ||
| Ss-71, | ||
| Ss-2, | ||
| 724, | ||
| 727, | ||
| 801, | ||
| 807, | ||
| 810, | ||
| 812, | ||
| 814, | ||
| 816, | ||
| 819, | ||
| 820, | ||
| 822, | ||
| 827, | ||
| 829, | ||
| 832, | ||
| 837, | ||
| 844, | ||
| 845, | ||
| 847, | ||
| 848, | ||
| 854, | ||
| 857, | ||
| 858, | ||
| 861, | ||
| 865, | ||
| Lou-5-1, | ||
| Lou-5-5, | ||
| SC-1, | ||
| CS, | ||
| MUL, | ||
| PIP-2, | ||
| TMC-1, | ||
| TMC-4, | ||
| CLV-1, | ||
| CLV-2, | ||
| PHL-2, | ||
| JAK-4, | ||
| JAK-5, | ||
| LGN-3, | ||
| LES-1, | ||
| LES-2, | ||
| LES-3, | ||
| REX-4, | ||
| MRV-1, | ||
| MRV-2, | ||
| MRV-4, | ||
| TMO-5, | ||
| MLN-1, | ||
| MLN-3, | ||
| GNV-1, | ||
| GNV-3, | ||
| GNV-4, | ||
| T-2, | ||
| T-6, | ||
| T-11, | ||
| T-12, | ||
| T-16, | ||
| T-17, | ||
| T-18, | ||
| Nor-1-1, | ||
| Nor-1-2, | ||
| Nor-1-3, | ||
| Nor-2-1, | ||
| Nor-2-2, | ||
| Nor-2-3, | ||
| Nor-3-2, | ||
| Nor-3-3, | ||
| Nor-4-1, | ||
| Nor-4-2, | ||
| Nor-4-3, | ||
| Nor-6-1, | ||
| Nor-6-2, | ||
| Nor-6-3, | ||
| A-1, | ||
| B-1, | ||
| B-2, | ||
| B-3, | ||
| B-4, | ||
| B-8, | ||
| B-9, | ||
| B-10, | ||
| C-1, | ||
| C-2, | ||
| C-5, | ||
| C-7, | ||
| C-10, | ||
| D-1, | ||
| D-2, | ||
| D-4, | ||
| D-5, | ||
| D-7, | ||
| D-8, | ||
| D-9, | ||
| D-10. | ||
| 3 | 5 | F5-223-S2, |
| F5-134-1-L1, | ||
| F5-213-S1, | ||
| BLA, | ||
| T-7. | ||
| 4 | 5 | W1-A1-1, |
| W1-A3-1, | ||
| W1-A3-3, | ||
| W1-A5-1, | ||
| W1-A5-4. | ||
| 5 | 45 | Ss-54, |
| Ss-77, | ||
| Ss-43, | ||
| 680, | ||
| 797, | ||
| 798, | ||
| 799, | ||
| 800, | ||
| 802, | ||
| 803, | ||
| 805, | ||
| 806, | ||
| 808, | ||
| 809, | ||
| 811, | ||
| 817, | ||
| 818, | ||
| 821, | ||
| 823, | ||
| 826, | ||
| 830, | ||
| 831, | ||
| 833, | ||
| 834, | ||
| 835, | ||
| 836, | ||
| 839, | ||
| 841, | ||
| 843, | ||
| 849, | ||
| 853, | ||
| 855, | ||
| 856, | ||
| 860, | ||
| Lou-2-1, | ||
| Lou-2-4, | ||
| Lou-4-1, | ||
| Lou-4-4, | ||
| Lou-4-5, | ||
| Lou-5-2, | ||
| Lou-5-3, | ||
| Lou-2-2, | ||
| Lou-2-3, | ||
| Lou-4-2, | ||
| Lou-4-3. | ||
| 6 | 2 | 729, |
| 815 | ||
| 7 | 2 | 804, |
| 824 | ||
| 8 | 1 | 813 |
| 9 | 33 | IC-169, |
| IC-170, | ||
| IC-171, | ||
| IC-172, | ||
| IC-174, | ||
| IC-175, | ||
| IC-178, | ||
| IC-179, | ||
| IC-180, | ||
| IC-186, | ||
| IC-189, | ||
| IC-190, | ||
| IC-192, | ||
| IC-193, | ||
| IC-194, | ||
| IC-212, | ||
| IC-213, | ||
| IC-215, | ||
| IC-251, | ||
| IC-255, | ||
| IC-258, | ||
| IC-259, | ||
| IC-260, | ||
| IC-327, | ||
| IC-328, | ||
| IC-329, | ||
| IC-341, | ||
| IC-347, | ||
| IC-348, | ||
| S1-A5-2, | ||
| S3-A5-2, | ||
| W3-A3-2, | ||
| W3-A3-5. | ||
| 10 | 25 | IC-236, |
| IC-238, | ||
| IC-239, | ||
| IC-271, | ||
| IC-273, | ||
| IC-276, | ||
| IC-277, | ||
| IC-278, | ||
| IC-284, | ||
| IC-286, | ||
| IC-288, | ||
| S1-A3-1, | ||
| S1-A3-2, | ||
| S3-A4-1, | ||
| S3-A4-2, | ||
| S6-A4-1, | ||
| S6-A4-2, | ||
| S6-A2-2, | ||
| S6-A2-5, | ||
| W2-A3-4, | ||
| W2-A3-5, | ||
| W2-A4-4, | ||
| W2-A4-5, | ||
| W3-A1-3, | ||
| W3-A1-5. | ||
| 11 | 1 | IC-264. |
| 12 | 23 | P-2, |
| P-3, | ||
| P-4, | ||
| P-6, | ||
| P-10, | ||
| V-1, | ||
| V-2, | ||
| V-3, | ||
| V-4, | ||
| V-5, | ||
| M-1, | ||
| M-3, | ||
| M-5, | ||
| M-6, | ||
| M-7, | ||
| R-1, | ||
| R-2, | ||
| R-3, | ||
| R-5, | ||
| R-6, | ||
| LMK-25, | ||
| LMK-45, | ||
| LMK-117. | ||
| 13 | 6 | M1-1, |
| M4-1, | ||
| M12-1, | ||
| M16-1, | ||
| M19-1, | ||
| LMK-115. | ||
| 14 | 7 | Nor-5-1, |
| Nor-5-2, | ||
| Nor-5-3, | ||
| Nor-7-1, | ||
| Nor-7-3, | ||
| 1358.P, | ||
| 1707.1. | ||
| 15 | 32 | T1-1, |
| T1-2, | ||
| T1-3, | ||
| T1-4, | ||
| T1-5, | ||
| T1-6, | ||
| T1-7, | ||
| T1-9, | ||
| T1-10, | ||
| T1-11, | ||
| T2-3, | ||
| T2-4, | ||
| T2-5, | ||
| T2-6, | ||
| T2-7, | ||
| T2-8, | ||
| T2-9, | ||
| T2-11, | ||
| T2-12, | ||
| T2-13, | ||
| T2-14, | ||
| T3-1, | ||
| T3-2, | ||
| T3-3, | ||
| T3-4, | ||
| T3-6, | ||
| T4-1, | ||
| T4-3, | ||
| T4-4, | ||
| T4-6, | ||
| T4-7, | ||
| T4-8. | ||
| 16 | 27 | B1-1A-1, |
| B1-1A-5, | ||
| B1-1A-6, | ||
| B1-1A-11, | ||
| B1-1A-12, | ||
| B1-1B-1, | ||
| B1-1B-2, | ||
| B1-1B-3, | ||
| B3-1-3, | ||
| B4-1-1, | ||
| B4-1-2, | ||
| B4-1-3, | ||
| B5-1-1, | ||
| B5-1-3, | ||
| B5-1-6, | ||
| R1-3-2, | ||
| R3-2-1, | ||
| J2-1A-2, | ||
| J2-1A-4, | ||
| J2-2B-6, | ||
| J2-2B-7, | ||
| Q1-6-1, | ||
| Q1-6-2, | ||
| Q1-8-1, | ||
| Q1-8-2, | ||
| Q4-1-3, | ||
| Q5-1-2. | ||
| 17 | 8 | LMK-36, |
| LMK-55, | ||
| 631, | ||
| 632, | ||
| 633, | ||
| 634, | ||
| 635, | ||
| 636 | ||
| 18 | 1 | 642.1. |
| 19 | 1 | 1128.P. |
| 20 | 1 | 2125.P. |
| 21 | 4 | BC-3, |
| BC-42, | ||
| LMK-1, | ||
| LMK-71. | ||
| 22 | 1 | BC-1. |
| 23 | 1 | 901.P. |
| 24 | 2 | 1297.P, |
| 2318.P. | ||
| 25 | 1 | LMK-161. |
| 26 | 1 | LMK-18. |